Application Description: GO-Elite is a software tool designed to identify a minimal non-redundant set of Gene Ontology (GO) biological terms or pathways to describe a particular set of genes.

Usage Info:

    
         goelite [options]
 
         The required arguments are as follows:
         
         --species species
             Species to analyze
         --denom denominator
             Input denominator file
         --input input
             Input gene list file
         
         Optional command-line arguments are:
         
         --mod gene_system
             gene system linked to GO database, default = "EntrezGene"
         --permutations count
             number of permutations to run, default = "2000"
         --method filter_method
             GO pruning algorithm, default = "z-score"
         --zscore threshold
             z-score threshold, default = 1.96
         --pval threshold
             p-value threshold, default = 0.05
         --num threshold
             minimum number of genes changed, default = 3